EdgeR and DESeq2, Part 2 - Independent Filtering
Offered By: StatQuest with Josh Starmer via YouTube
Course Description
Overview
Explore the differences between edgeR and DESeq2's approaches to filtering genes with low read counts in this informative video. Learn about false positives, histograms, FDR, CPM filtering, sequencing depth, and various CPM cutoffs. Gain insights into the results and their interpretation, as well as the key distinctions between DESeq2 and edgeR methodologies. Discover how to effectively analyze and filter genomic data for more accurate differential expression analysis.
Syllabus
Intro
False positives
Histogram
FDR
Results
Results histogram
CPM
Filtering
Sequencing Depth
Different CPM cutoffs
Differences between DESeq2 edgeR
Summary
Taught by
StatQuest with Josh Starmer
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