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PyMol Advanced Session: Protein-Ligand Interactions and Plugin Installation

Offered By: Bioinformatics With BB via YouTube

Tags

Bioinformatics Courses Structural Biology Courses Protein-Ligand Interactions Courses

Course Description

Overview

Explore advanced features in Pymol through this 30-minute video session focusing on protein-ligand interactions and plugin installation. Learn to visualize and analyze ligand-protein interactions, install plugins like Autodock and Gromacs, and perform protein annotations including RMSD calculations, active site identification, and salt bridge analysis. Discover how to manipulate ligand models, adjust stick sizes, and visualize interactions with calcium ions. Master plugin installation and usage, alignment techniques, and the visualization of disulfide and hydrogen bonds. Gain practical skills in using Pymol for advanced structural biology analysis and enhance your bioinformatics toolkit.

Syllabus

Introduction
Facebook Group
Reminder
Advanced Features
Check Interaction
Ligand Model
Stick Size
Interactions
Calcium
Reduction
Protein Interaction
Plugins
Plugin Installation
Plugin Demonstration
Alignment
Disulfide Bonds
Hydrogen Bonds
Total Hydrogen Bonds
Cube Calcium
Scene Undo
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Taught by

Bioinformatics With BB

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