Processing Whole Slide Images as Tiles
Offered By: DigitalSreeni via YouTube
Course Description
Overview
Learn to process whole slide images using Python in this comprehensive tutorial. Explore techniques for H&E normalization and signal separation using openslide to read and manipulate whole slide images. Extract lower resolution versions for normalization and separate H and E signals. Dive into tile-based processing for entire whole slide images, including extraction, processing, and saving. Gain insights into slide properties, dimensions, and statistical measures. Access accompanying code on GitHub and explore additional resources for deeper understanding of histology slide normalization and nucleus detection in histopathology images. Note that image pyramid reconstruction is not covered, but suggestions for further exploration are provided.
Syllabus
Introduction
Paper
Importing libraries
Extracting slide properties
Printing slide dimensions
Mean and standard deviation
Reading the original tiles
Reading individual tiles
Taught by
DigitalSreeni
Related Courses
Introduction to Agile Software Development: Tools & TechniquesUniversity of California, Berkeley via edX Advanced Topics and Techniques in Agile Software Development
University of California, Berkeley via edX The Data Scientist’s Toolbox
Johns Hopkins University via Coursera How to Use Git and GitHub
Udacity Desarrollo de Videojuegos 3D en Unity: Una Introducción
Universidad de los Andes via Coursera