YoVDO

Neural Network Potentials for Low-Energy 3D Structure Generation and Reactivity Prediction

Offered By: Valence Labs via YouTube

Tags

Molecular Modeling Courses Stereochemistry Courses Drug Discovery Courses Computational Chemistry Courses

Course Description

Overview

Save Big on Coursera Plus. 7,000+ courses at $160 off. Limited Time Only!
Explore a comprehensive 50-minute talk on neural network potentials for low-energy 3D structure generation and reactivity prediction. Delve into the challenges of obtaining optimal molecular structures and learn about the Python-based Auto3D package, which automates isomer enumeration, 3D building, geometry optimization, and ranking processes. Discover the ANI-2xt model, an extension of ANI trained on tautomer-rich datasets, and its improved performance in tautomeric reaction energy calculations. Gain insights into the background, uncertainty in stereochemistry, neural network potentials, and Auto3D's overview. Examine a practical example of Gibbs free energy calculations for tautomerization reactions and conclude with an Auto3D tutorial.

Syllabus

- Intro
- Background
- Uncertainty in Stereochemistry
- Neural Network Potential
- Auto3D Overview
- Example: Gibbs Free Energy of Tautomerization Reactions
- Auto3D Tutorial


Taught by

Valence Labs

Related Courses

Quantitative Biology Workshop
Massachusetts Institute of Technology via edX
Computer Aided Drug Design
Indian Institute of Technology Madras via Swayam
Fundamentals of Bioinformatics
Sree Neelakanta Govt. Sanskrit College via Swayam
Drug development process: combating pain
The Open University via OpenLearn
How Will Quantum Computing Change the Technology Landscape? - Bruce Davie, Systems Approach, LLC
Paul G. Allen School via YouTube