Genomics

Explore a comprehensive genomics course covering essential bioinformatics techniques for beginners. Learn genome assembly and annotation using Illumina reads and SPAdes, perform genome comparisons with BRIG software, and combine Nanopore and Illumina reads for improved assemblies. Master bacterial genome analysis, including annotation with Prokka and comparative genomics. Create phylogenetic trees using MUSCLE, PHYML, and RAxML, and visualize them with iTOL. Discover genome visualization techniques using CGView and Artemis (DNAPlotter). Identify antimicrobial resistance genes with Abricate, create Manhattan plots of FST values using Python, and assemble genomes from Oxford Nanopore Technologies (ONT) reads using FLYE. Gain hands-on experience through tutorials and practical exercises to develop essential skills in genomic analysis and interpretation.

Bioinformatics for beginners | Course | Genome Assembly and Annotation | llumina Reads | SPAdes.
A bioinformatics tutorial on Genome comparison using BRIG software.
A bioinformatics tutorial on GENOME ASSEMBLY | COMBINING NANOPORE AND ILLUMINA READS.
Bioinformatics for beginners | Course | Genome Assembly and Annotation | Bacterial Genomes | Prokka.
A bioinformatics tutorial on Bacterial Genome Analysis | Comparative Genomics.
Create phylogenetic trees using MUSCLE and PHYML.
CREATE MANHATTAN PLOT OF FST VALUES USING PYTHON.
Bioinformatics for Beginners | Course | Genome visualization using the online CGView tool.
Genome Visualization using Artemis (DNAPlotter) | Bioinformatics for Beginners | Course | Tutorial.
A bioinformatics tutorial on how to identify Antimicrobial Resistance Genes | Abricate | Beginners.
Build Phylogenetic Trees based on Gene Sequences.
How to Build Phylogenetic Trees using RAxML and iTOL | Bioinformatics for Beginners |Tutorial.
Visualize phylogenetic trees using iTOL.
Genome Assembly Tutorial | ONT reads | FLYE | Bioinformatics for Beginners.